Findings

Lasting Longer

Kevin Lewis

May 06, 2023

On the duration of empires
Kevin Sylwester
European Journal of Political Economy, forthcoming 

Abstract:

Why did some empires endure for centuries whereas others quickly fade? To approach this question, I focus on geography, namely the extent to which an empire abutted a sea. Seas could have allowed for greater opportunities for integration as well as trade with external polities. I consider historical empires from antiquity until 1922 and examine whether those empires with larger coastlines relative to their areas endured longer. Using various estimation methodologies and instrumenting for the length of the coastline, I find support that empires that were more connected to seas lasted longer. Further analysis suggests that the potential for seaways to lead to greater integration provides a stronger explanation than the potential for seas to provide a defensive barrier.


A lost campaign? New evidence of Roman temporary camps in northern Arabia
Michael Fradley et al.
Antiquity, forthcoming 

Abstract:

Remote sensing survey in southern Jordan has identified at least three Roman temporary camps that indicate a probable undocumented military campaign into what is today Saudi Arabia, and which we conjecture is linked to the Roman annexation of the Nabataean kingdom in AD 106.


The functional and evolutionary impacts of human-specific deletions in conserved elements
James Xue et al.
Science, 28 April 2023 

Abstract:

Conserved genomic sequences disrupted in humans may underlie uniquely human phenotypic traits. We identified and characterized 10,032 human-specific conserved deletions (hCONDELs). These short (average 2.56 base pairs) deletions are enriched for human brain functions across genetic, epigenomic, and transcriptomic datasets. Using massively parallel reporter assays in six cell types, we discovered 800 hCONDELs conferring significant differences in regulatory activity, half of which enhance rather than disrupt regulatory function. We highlight several hCONDELs with putative human-specific effects on brain development, including HDAC5, CPEB4, and PPP2CA. Reverting an hCONDEL to the ancestral sequence alters the expression of LOXL2 and developmental genes involved in myelination and synaptic function. Our data provide a rich resource to investigate the evolutionary mechanisms driving new traits in humans and other species.


Ancient human DNA recovered from a Palaeolithic pendant
Elena Essel et al.
Nature, forthcoming 

Abstract:

Artefacts made from stones, bones and teeth are fundamental to our understanding of human subsistence strategies, behaviour and culture in the Pleistocene. Although these resources are plentiful, it is impossible to associate artefacts to specific human individuals who can be morphologically or genetically characterized, unless they are found within burials, which are rare in this time period. Thus, our ability to discern the societal roles of Pleistocene individuals based on their biological sex or genetic ancestry is limited. Here we report the development of a non-destructive method for the gradual release of DNA trapped in ancient bone and tooth artefacts. Application of the method to an Upper Palaeolithic deer tooth pendant from Denisova Cave, Russia, resulted in the recovery of ancient human and deer mitochondrial genomes, which allowed us to estimate the age of the pendant at approximately 19,000–25,000 years. Nuclear DNA analysis identifies the presumed maker or wearer of the pendant as a female individual with strong genetic affinities to a group of Ancient North Eurasian individuals who lived around the same time but were previously found only further east in Siberia. Our work redefines how cultural and genetic records can be linked in prehistoric archaeology.


The three waves: Rethinking the structure of the first Upper Paleolithic in Western Eurasia
Ludovic Slimak
PLoS ONE, May 2023

Abstract:

The Neronian is a lithic tradition recognized in the Middle Rhône Valley of Mediterranean France now directly linked to Homo sapiens and securely dated to 54,000 years ago (ka), pushing back the arrival of modern humans in Europe by 10 ka. This incursion of modern humans into Neandertal territory and the relationships evoked between the Neronian and the Levantine Initial Upper Paleolithic (IUP) question the validity of concepts that define the first H. sapiens migrations and the very nature of the first Upper Paleolithic in western Eurasia. Direct comparative analyses between lithic technology from Grotte Mandrin and East Mediterranean archeological sequences, especially Ksar Akil, suggest that the three key phases of the earliest Levantine Upper Paleolithic have very precise technical and chronological counterparts in Western Europe, recognized from the Rhône Valley to Franco-Cantabria. These trans-Mediterranean technical connections suggest three distinct waves of H. sapiens expansion into Europe between 55–42 ka. These elements support an original thesis on the origin, structure, and evolution of the first moments of the Upper Paleolithic in Europe tracing parallel archaeological changes in the East Mediterranean region and Europe.


Natural products from reconstructed bacterial genomes of the Middle and Upper Paleolithic
Martin Klapper et al.
Science, forthcoming 

Abstract:

Major advances over the past decade in the field of ancient DNA are providing access to past paleogenomic diversity, but the diverse functions and biosynthetic capabilities of this growing paleome remain largely elusive. Here, we investigated the dental calculus of 12 Neanderthals and 52 anatomically modern humans spanning 100 kya to the present and reconstructed 459 bacterial metagenome-assembled genomes (MAGs). We identified a biosynthetic gene cluster (BGC) shared by seven Middle and Upper Paleolithic individuals that allows for the heterologous production of a class of previously unknown metabolites we name paleofurans. This paleobiotechnological approach demonstrates that viable biosynthetic machinery can be produced from the preserved genetic material of ancient organisms, allowing access to natural products from the Pleistocene and providing a promising area for natural product exploration.


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